rs27510496 SNP Detail

Summary

• ID
  rs27510496
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118857417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAGTAA AGACTGTAGT
  TCTGAACTCT CGGTGGGAAA CGGCCCTCCC CCCCCAAGCC AAGTTATATC CAGCTTTATA
  AGCACTTCCT TCCAGGAGGA TGTGGGCAGA AACTTACAAG ACTTTGTAAT GTCCAAATTC
  CCCATCCCAA AACGTCACTG TAAAAATCAA CAAAGCCTCC TGTGGCTGCG CTAAACAGAA
  R
  TAGTTTACAG AGGGGCTGCT GCCCGGTCAC TGGAGGCGCA CAAGAGCCCT TCAAAGGCTC
  TGACGTGCAG GAAGGGAAGC AAAACCTGTA AGGTCCACAG CAGTGATCTC TGAACATCAA
  CCTGGTGTCA CTCAGGAAAT CCACGTAGTG TGAATCTAAC ACTGTCAGCC TCAGTGATGC
  CGCAGGTCCC CATCAGACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37686028	NES09200029	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27510496					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37686028	NES09200029	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118857417 () rs orientation: forward

Symbol	Name	Function Class
Gm12861	predicted gene 12861	762 bp downstream
Gm12862	predicted gene 12862	within coordinates
Rr398425	regulatory region 398425	367 bp downstream
Rr598452	regulatory region 598452	777 bp distal
Rr598453	regulatory region 598453	within coordinates
Rr598454	regulatory region 598454	255 bp proximal
Rr598455	regulatory region 598455	1474 bp proximal