rs27510500 SNP Detail

Summary

• ID
  rs27510500
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:118856493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTGATCT ACAGCTTACT
  TTGCTCTGTT CCTACAGAAC TTCACGAAGC TGTTAAATGC ATTGGACCAT GGTGTTTGGA
  GAAATCAAAA TCTGTCCCCA GGCCATGGCC ATTCAGATCT GGTTCCGTCT CTTTTTTCTT
  GGAAGTGAGA GCTGTTTCCT TCAACGGAGC GAAGCAACTG GCCTCGCTAA AATACTCGTG
  R
  TCAGGAAACA CCTAGTAAGA GCTGGAGAGA TGGCTCAGTG GTTACGAGCA CTGACTGCTT
  TTTCAGAGGA CCTTGGTTTG AGTCCCAGCA CCCACATAAC TGTATGTACC TCCAGTTTCG
  GTGGTCTGTT GCCCTCTTCT GCCCTCTGCA GACACACATG TGGTGCACAG ACATGCATGT
  AAGCAAAATT CCCATACACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37686032	NES09200064	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27510500					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37686032	NES09200064	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118856493 () rs orientation: forward

Symbol	Name	Function Class
Gm12861	predicted gene 12861	within coordinates
Gm12862	predicted gene 12862	364 bp downstream
Gm12865	predicted gene 12865	1259 bp upstream
Rr398425	regulatory region 398425	256 bp upstream
Rr598451	regulatory region 598451	1638 bp distal
Rr598452	regulatory region 598452	126 bp proximal
Rr598453	regulatory region 598453	282 bp proximal
Rr598454	regulatory region 598454	1179 bp proximal