rs27511156 SNP Detail

Summary

• ID
  rs27511156
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116026396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCTTACG GAGTTCAGAG
  CAGCCCATCA GATCCCCTGG AGTCCTGGAA CTGAAAGTTA AGGAGGCAGT GAGCCACCAT
  GTGGGTGCTG GAAATCAAAC CAAGGTCCTT TGCAGCCTCA ACCACTATGT CATTTCTCCA
  GCCCCCCCCC CCGCCCCCCC CCCACTCTTC TTTTCCCCCT CTCCATATTC TGGAATCCAG
  W
  GTATGGCCCT GGTCATTCTG CCAGCAGGTG GCACTATGGG CCTACAAAGG AGACACTATC
  ACCCCAAGGT TCTGTAACCC TTCTTTTCTG GGGCTCCCTC TTTGTTTTCC TACTCCAAGC
  TTCCTGGTTG AGAGGTTCTT CACAAGTCCT TGCTCCCCAA ATTCTGGTTC TGTCATTTCT
  TAGCTGTGTG GGCCCTGGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37695081	NES09224346	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27511156					SNP	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37695081	NES09224346	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116026396 () rs orientation: forward

Symbol	Name	Function Class
Rr84349	regulatory region 84349	1196 bp distal
Rr84350	regulatory region 84350	796 bp distal
Rr84351	regulatory region 84351	within coordinates
Rr95993	regulatory region 95993	985 bp proximal
Rr101863	regulatory region 101863	1196 bp distal
Rr101864	regulatory region 101864	within coordinates
Tspan1	tetraspanin 1	1598 bp upstream
Tssr42870	transcription start site region 42870	1620 bp upstream
Tssr42871	transcription start site region 42871	1592 bp upstream