rs27511158 SNP Detail

Summary

• ID
  rs27511158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116025080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCCCCTG CTGCCCCCTA
  CTGCCTGGAG ATAAGTTCCC AACACTGAAA GCAATAATTA AATCTCTACC TGGAAATGTC
  ACCATAGACT CTGCCTCTCC TGAAAAGGGG TGTATGGGGC AGCAGTGTCA GGAGCTGGAC
  AAGTAGCTTT CTAGAACTTT TGGGTGCCTC GCTCACAATA GTGTGATATG ATTCTTACCT
  Y
  GAAACTGTGT GTTTACTGGC ACCCACATCT GCTCGAGCTG CCACCCATAT GTTTACACAC
  AAAACTCAGT CACGGGGGGC TGGTGAGATG GCTCAACAGG TAAGAGCACC CGACTGCTCT
  TCCGAAGGTC CTGAGTTCAA ATTCCGGCAA CCACATGGTG GCTCACAACC ATCCATAATG
  AGATCTGACT CCCTCTTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37695083	NES09224465	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27511158					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37695083	NES09224465	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116025080 () rs orientation: forward

Symbol	Name	Function Class
Rr84349	regulatory region 84349	within coordinates
Rr84350	regulatory region 84350	321 bp proximal
Rr84351	regulatory region 84351	921 bp proximal
Rr101863	regulatory region 101863	within coordinates
Rr101864	regulatory region 101864	619 bp proximal
Tspan1	tetraspanin 1	282 bp upstream
Tssr42870	transcription start site region 42870	304 bp upstream
Tssr42871	transcription start site region 42871	276 bp upstream