rs27511165 SNP Detail

Summary

• ID
  rs27511165
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116024266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGCTTC CTTCTCATAT
  AGGAAAATTT ACAGGGCAGA GTCTGGGTAC CTAGTTTCCC ATTCTCCAGC CTGGCCTCTG
  TTCAGACTGT GACCTGCTTT TGTAAGGAAC CCCAGGAAAC CCACAACCAC CATACTTACA
  AAGATGAGTA GATTGAAGAG GAACATCATG ACCTTAATGA ATTTGAAGCA CTGCATGGTG
  K
  GTCCTGGGAA ACAGACATGC ACAAATTAGG GCCTTACCTC CCACTTGCCC TGGGCTGGCT
  GTGTTTTTTT GAGTCCAACA TCTTGTTATT TCTCACCAAA TTTCCCCTGC ATCTGGACTC
  TAATATCTCA GAACTTTTTC CAGTCCTTTT GTTGACACGT ATGCCCACCT GTACTAGTTC
  TCAGATCTTA ATATCCCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37695090	NES09224458	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	G	T	T	T	G	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27511165					SNP	T	T	G	T	T	G	T	T	T	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37695090	NES09224458	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116024266 () rs orientation: forward

Symbol	Name	Function Class
Rr84349	regulatory region 84349	335 bp proximal
Rr84350	regulatory region 84350	1135 bp proximal
Rr84351	regulatory region 84351	1735 bp proximal
Rr101863	regulatory region 101863	within coordinates
Rr101864	regulatory region 101864	1433 bp proximal
Tspan1	tetraspanin 1	within coordinates
Tssr42870	transcription start site region 42870	494 bp downstream
Tssr42871	transcription start site region 42871	522 bp downstream