rs27511166 SNP Detail

Summary

• ID
  rs27511166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116024040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAACTTAA GCAGAGCCCC
  TTTCCTCTCT GAACCGTGAA TGCCTATTTT AAAATGGGGG AGGGGGGACA ATCATTCCTG
  CTAGCCAGCC CTGCCCCAGA ATGATCCTTC CTAGAAGGGA GGTGAGAGAC TCAAGCTTCT
  CCATCCCTAG CCTTCCGCAT CTTCACCCAA ACCTCTGTGT GGCAGTCAGG TTGTTAGTGG
  R
  ATCAGGAATC AGCATTTGGG AAGACCCTCT GCTTCCTTCT CATATAGGAA AATTTACAGG
  GCAGAGTCTG GGTACCTAGT TTCCCATTCT CCAGCCTGGC CTCTGTTCAG ACTGTGACCT
  GCTTTTGTAA GGAACCCCAG GAAACCCACA ACCACCATAC TTACAAAGAT GAGTAGATTG
  AAGAGGAACA TCATGACCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37695091	NES09224457	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27511166					SNP	A	A	G	A	A	A	G	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37695091	NES09224457	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116024040 () rs orientation: forward

Symbol	Name	Function Class
Rr84349	regulatory region 84349	561 bp proximal
Rr84350	regulatory region 84350	1361 bp proximal
Rr84351	regulatory region 84351	1961 bp proximal
Rr101863	regulatory region 101863	within coordinates
Rr101864	regulatory region 101864	1659 bp proximal
Tspan1	tetraspanin 1	within coordinates
Tssr42870	transcription start site region 42870	720 bp downstream
Tssr42871	transcription start site region 42871	748 bp downstream