rs27511173 SNP Detail

Summary

• ID
  rs27511173
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116023601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCAATGCA AATGTCCAAC
  CTCAACTACT TCCTCCAGGA AGCACTTTCC AACTAGGCTG TATTCAAACC CCTTCAGGGC
  CTCCCTTACT TAGCCTTGCC GGTAAATCTA AAAGTACCAC TTTGCAATTG TCAGTATATA
  TAGCAATTAT CAGCCTCTTT GACAATGATC AGCCTATCTG ATTTACTGAA CCTGAGATTC
  W
  CAAGGGCAGT GAATGGCCTG GCTCTACCCT AGCACATAGC ACTGAGTCTT AGTCAATGAA
  TATTTTCCTT TTTGTTTGTG GACTCGTGCA TGCTAAGCAA ATGCTCTACC ACTGAACAAC
  AATCTCAGAC CCTTAAATGC CAGCCCAGTC AATGAGTACT TATTGAGTCA ACTAAGAGGC
  ATGGATAAGA CTCTCAGCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37695098	NES09224445	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	T	A	T	T	T	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27511173					SNP	T	T	A	T	T	T	A	T	T	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37695098	NES09224445	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116023601 () rs orientation: forward

Symbol	Name	Function Class
Tspan1	tetraspanin 1	within coordinates
Tssr42869	transcription start site region 42869	1989 bp upstream
Tssr42870	transcription start site region 42870	1159 bp downstream
Tssr42871	transcription start site region 42871	1187 bp downstream