rs27511174 SNP Detail

Summary

• ID
  rs27511174
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116023548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATATCAAA TTTCATTACC
  TCTGGGCCTT CCTACGCCCT TTAGGGCTCC CCCACCCAAT GCAAATGTCC AACCTCAACT
  ACTTCCTCCA GGAAGCACTT TCCAACTAGG CTGTATTCAA ACCCCTTCAG GGCCTCCCTT
  ACTTAGCCTT GCCGGTAAAT CTAAAAGTAC CACTTTGCAA TTGTCAGTAT ATATAGCAAT
  Y
  ATCAGCCTCT TTGACAATGA TCAGCCTATC TGATTTACTG AACCTGAGAT TCTCAAGGGC
  AGTGAATGGC CTGGCTCTAC CCTAGCACAT AGCACTGAGT CTTAGTCAAT GAATATTTTC
  CTTTTTGTTT GTGGACTCGT GCATGCTAAG CAAATGCTCT ACCACTGAAC AACAATCTCA
  GACCCTTAAA TGCCAGCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37695099	NES09224443	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27511174					SNP	T	T	C	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37695099	NES09224443	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116023548 () rs orientation: forward

Symbol	Name	Function Class
Rr84349	regulatory region 84349	1053 bp proximal
Rr84350	regulatory region 84350	1853 bp proximal
Rr101863	regulatory region 101863	within coordinates
Tspan1	tetraspanin 1	within coordinates
Tssr42869	transcription start site region 42869	1936 bp upstream
Tssr42870	transcription start site region 42870	1212 bp downstream
Tssr42871	transcription start site region 42871	1240 bp downstream