rs27511178 SNP Detail

Summary

• ID
  rs27511178
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116022911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTCAGTT ATCTGAATGA
  AACCTAGTTC TTGGCAGCCA AAGCCCAAGG TACAGACCAC ATTGGAGTCA AAGAGACTAC
  TTACCCTTTG CCCAGTTTCT CTAAACTGGT ACACACGCCA TGTCTTTATT CTCTCCCCTC
  CCACTCATTA TTCTCTGGTG ACATGGGCCC CTGACCACTG TTTTTAAACA CCCCTTTTCC
  K
  CCTTTCCTTC CTACTGTCCT TTGCCTCCAT CACTGTGGCT ATTTTTCTGT TCATCTCTAC
  TTCCAGTTTC CAAGAACTGA CTTTCTTTGA GACCAGGGGT TCTATAATAT TCGCAAGGCT
  ACAGCAGGGG TGGAAGGCAG ACTTTCCCTT ACTGTTGCCA GAGTCCTCTC CCACCCCTAT
  GACCTCACTG GCTGCTCACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37695103	NES09224436	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27511178					SNP	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37695103	NES09224436	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116022911 () rs orientation: forward

Symbol	Name	Function Class
Rr84349	regulatory region 84349	1690 bp proximal
Rr101863	regulatory region 101863	within coordinates
Tspan1	tetraspanin 1	within coordinates
Tssr42867	transcription start site region 42867	1992 bp upstream
Tssr42868	transcription start site region 42868	1943 bp upstream
Tssr42869	transcription start site region 42869	1299 bp upstream
Tssr42870	transcription start site region 42870	1849 bp downstream
Tssr42871	transcription start site region 42871	1877 bp downstream