rs27512752 SNP Detail

Summary

• ID
  rs27512752
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117039393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTAATCCCA GCACTCAGGA GGCCGAGGAA GCCGCGGGTC
  CAACAAAGCA AAACAGGTTC AGAGGAAATG CATCCAATCG CTATAACCTA GCTAGGCGCA
  Y
  CAATAACCGC AGACGTGCTC CGCCCACACT CAGAAAGCAG GCAAGGGACC CACAACCAAA
  GTAGCGTTTT CCTCCTGTGT AGGGGACACC GACTGCCAGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37693185	NES09220988	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27512752					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37693185	NES09220988	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117039393 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14654	CpG island 14654	within coordinates
Gm68778	predicted gene, 68778	1947 bp downstream
Kif2c	kinesin family member 2C	within coordinates
Rr398412	regulatory region 398412	310 bp upstream
Tssr42965	transcription start site region 42965	341 bp downstream
Tssr42966	transcription start site region 42966	427 bp downstream
Tssr42967	transcription start site region 42967	753 bp downstream