rs27512754 SNP Detail

Summary

• ID
  rs27512754
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117038917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGAGTTC GAGGTCAGCC
  TGATCTACAA AGCAAGTCCA GGTCCAAGGC CCTGTTACAG AGAAACTGTC TCAAAAAATA
  AAACAAAACA CAAATGCTAG TTAGTAATTC TAGTGGGGTT CACCCTTAGA CCATTCCACA
  GTGGAAGTGA ACAGGGAATG GGCCTTAAAC CCCAGCTCCA TAGGATAAAA TTGCATCACC
  R
  CTCCAACAGA ATGAAGATTC ATTTGAGCAA GTAAGTTACT ACATTCCTTG GAGGAGCTAT
  TCCTGAACAC ATCAGTAAAG AGCTGGACCG CTGGAGTTCC CTGGTCCATT TTTGGCAGTG
  GTTGGCTAGT CCATGAATGA CCCGTTATTA GACCTGTAGA AATTGCTTAA TAAAGACAGA
  TGGTTGAGCC GGGCAGTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37693187	NES09220997	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27512754					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37693187	NES09220997	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117038917 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14654	CpG island 14654			440 bp proximal
Gm68778	predicted gene, 68778			1471 bp downstream
Kif2c	kinesin family member 2C			Intron
				Noncoding-Transcript-Variant
Rr398412	regulatory region 398412			786 bp upstream
Rr598074	regulatory region 598074			84 bp proximal
Rr598075	regulatory region 598075			909 bp proximal
Tssr42965	transcription start site region 42965			817 bp downstream
Tssr42966	transcription start site region 42966			903 bp downstream
Tssr42967	transcription start site region 42967			1229 bp downstream