rs27512756 SNP Detail

Summary

• ID
  rs27512756
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117037874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGCACAG CATTAGGCTG
  GGCTGTCACC GGTTCACACA GATGCTCTGC ACAGGATCAT GGGAGATGCC ACACAAGCAT
  CCTCAGAGGA CCTACCTCTT TGCCTTTTGT GGTACCTCCT TCGATCCATT CCACCGAAAC
  ACAGGATTTC TCCACGTTCA CTGTGCTTAT ATTGGCGGGG TGAATTAAGC CTATGTATGA
  R
  AAGGTCAGAA GTTATCCATG TGTCTCCTAA GAACTTAAGT TTTTTTTAAG GTGTTCTTTT
  TTTTTTTTTG ACTGCGCCAC CACTGCCTGG CCAAACTTAA GTTTTTATTC TCCACTTTGC
  TTTTAGGATC CTAAAGACTT CAAATTTACA TTTACCTCGG AAGGGAAATT TGTTTTGTTT
  TGTTTTTGTT TTTTTTTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37693189	NES09221054	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27512756					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37693189	NES09221054	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117037874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14654	CpG island 14654	1483 bp proximal
Gm68778	predicted gene, 68778	428 bp downstream
Kif2c	kinesin family member 2C	within coordinates
Rr398412	regulatory region 398412	1829 bp upstream
Tssr42962	transcription start site region 42962	1959 bp upstream
Tssr42963	transcription start site region 42963	1923 bp upstream
Tssr42964	transcription start site region 42964	1898 bp upstream
Tssr42965	transcription start site region 42965	1860 bp downstream
Tssr42966	transcription start site region 42966	1946 bp downstream