rs27512859 SNP Detail

Summary

• ID
  rs27512859
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117012603 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACCCCCCC TAACACAGGA AGAACCCCAG TAAGGAACAC
  ACCAAGCTTG CAGCTCTCCC ACTCCTAGGC TCCAGTAGAC CCTAAGCTTG GAGATTAGGG
  W
  GCACAGACCC TGCACGTGGA CACACTTCCA TGTCCAGTCG CCAGCACCGA GAAACCTGAG
  CCTTACAAAG GTGATCACAG CCACTCGTGT TCCCCAGCAA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	NZW/LacJ	WSB/EiJ
ss37693292	NES09221771	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	NZW/LacJ	WSB/EiJ
rs27512859					SNP	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37693292	NES09221771	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117012603 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	within coordinates
Gm22980	predicted gene, 22980	1244 bp upstream
Gm26330	predicted gene, 26330	117 bp upstream
Rps8	ribosomal protein S8	within coordinates
Rr377051	regulatory region 377051	894 bp downstream
Rr398411	regulatory region 398411	513 bp upstream
Rr598069	regulatory region 598069	827 bp proximal
Snord38a	small nucleolar RNA, C/D box 38A	832 bp upstream
Snord55	small nucleolar RNA, C/D box 55	365 bp downstream
Tssr38607	transcription start site region 38607	1568 bp downstream
Tssr42956	transcription start site region 42956	438 bp downstream
Tssr42957	transcription start site region 42957	669 bp downstream
Tssr42958	transcription start site region 42958	716 bp downstream
Tssr42959	transcription start site region 42959	738 bp downstream
Tssr42960	transcription start site region 42960	779 bp downstream
Tssr42961	transcription start site region 42961	793 bp downstream