rs27512860 SNP Detail

Summary

• ID
  rs27512860
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117012348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGGTACTTC TTATTGCCTC CTCGAACTCG GACTGTGTGT
  ATGCGGCGAG GGCCAATCTA GAGAACACAA GAAGGCCAGA ACATGTGTCA TCAAAACGAG
  W
  GGGGACTGGG AGAGGAACCC GAACCAGACG GAGGTAACAG TCAGTGTAAC TATGACAAGT
  CCTTGCATTG GCAAGTGGTG TACAGGTGGC CAAGACGGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37693293	NES09221770	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T		T	A	T	T	A	A
ss147285230	ENSMUSSNP2367534	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27512860					SNP	T	T	A	T	T	T	A	T	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37693293	NES09221770	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117012348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	206 bp proximal
Gm22980	predicted gene, 22980	989 bp upstream
Gm26330	predicted gene, 26330	35 bp downstream
Rps8	ribosomal protein S8	within coordinates
Rr377051	regulatory region 377051	639 bp downstream
Rr398411	regulatory region 398411	768 bp upstream
Rr598068	regulatory region 598068	1822 bp distal
Rr598069	regulatory region 598069	1082 bp proximal
Snord38a	small nucleolar RNA, C/D box 38A	577 bp upstream
Snord55	small nucleolar RNA, C/D box 55	620 bp downstream
Tssr38607	transcription start site region 38607	1313 bp downstream
Tssr42956	transcription start site region 42956	693 bp downstream
Tssr42957	transcription start site region 42957	924 bp downstream
Tssr42958	transcription start site region 42958	971 bp downstream
Tssr42959	transcription start site region 42959	993 bp downstream
Tssr42960	transcription start site region 42960	1034 bp downstream
Tssr42961	transcription start site region 42961	1048 bp downstream