rs27512861 SNP Detail

Summary

• ID
  rs27512861
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117012314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCAGGAAAA GTTCCCCACA TCCAATCTCA GGGCACGGTA
  CTTCTTATTG CCTCCTCGAA CTCGGACTGT GTGTATGCGG CGAGGGCCAA TCTAGAGAAC
  R
  CAAGAAGGCC AGAACATGTG TCATCAAAAC GAGTGGGGAC TGGGAGAGGA ACCCGAACCA
  GACGGAGGTA ACAGTCAGTG TAACTATGAC AAGTCCTTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37693294	NES09221769	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A		A	G	A	A	G	G
ss147285224	ENSMUSSNP5298436	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27512861					SNP	A	A	G	A	A	A	G	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37693294	NES09221769	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117012314 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	240 bp proximal
Gm22980	predicted gene, 22980	955 bp upstream
Gm26330	predicted gene, 26330	69 bp downstream
Rps8	ribosomal protein S8	within coordinates
Rr377051	regulatory region 377051	605 bp downstream
Rr398411	regulatory region 398411	802 bp upstream
Rr598068	regulatory region 598068	1788 bp distal
Rr598069	regulatory region 598069	1116 bp proximal
Snord38a	small nucleolar RNA, C/D box 38A	543 bp upstream
Snord55	small nucleolar RNA, C/D box 55	654 bp downstream
Tssr38607	transcription start site region 38607	1279 bp downstream
Tssr42956	transcription start site region 42956	727 bp downstream
Tssr42957	transcription start site region 42957	958 bp downstream
Tssr42958	transcription start site region 42958	1005 bp downstream
Tssr42959	transcription start site region 42959	1027 bp downstream
Tssr42960	transcription start site region 42960	1068 bp downstream
Tssr42961	transcription start site region 42961	1082 bp downstream