rs27512862 SNP Detail

Summary

• ID
  rs27512862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117012131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAATCAGGG GCTGGGGCAG TTAATGTTTT TTTATTACTG
  AAATCTTTTT TTAACATTCT CTAGAAAGCA CCTCTCATTG CAGGAGTTAA GAGATCAGAA
  Y
  ATGGCAAAGA ATTCTCCAAC TACCTCAGGA TCTTTCAGCA AGAACAAATT CAAATACTTC
  AACACCTACT TACACTCAGA GCCCCAGGAA AAGTTCCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37693295	NES09221768	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27512862					SNP	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37693295	NES09221768	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117012131 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	423 bp proximal
Gm22980	predicted gene, 22980	772 bp upstream
Gm26330	predicted gene, 26330	252 bp downstream
Rps8	ribosomal protein S8	within coordinates
Rr377051	regulatory region 377051	422 bp downstream
Rr398411	regulatory region 398411	985 bp upstream
Rr598068	regulatory region 598068	1605 bp distal
Rr598069	regulatory region 598069	1299 bp proximal
Snord38a	small nucleolar RNA, C/D box 38A	360 bp upstream
Snord55	small nucleolar RNA, C/D box 55	837 bp downstream
Tssr38607	transcription start site region 38607	1096 bp downstream
Tssr42956	transcription start site region 42956	910 bp downstream
Tssr42957	transcription start site region 42957	1141 bp downstream
Tssr42958	transcription start site region 42958	1188 bp downstream
Tssr42959	transcription start site region 42959	1210 bp downstream
Tssr42960	transcription start site region 42960	1251 bp downstream
Tssr42961	transcription start site region 42961	1265 bp downstream