rs27512865 SNP Detail

Summary

• ID
  rs27512865
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117011132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAG AACTCCAGCT CCTTGCCTTC
  R
  AGCACATAGC CGTCTGCTCT GCCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37693298	NES09221765	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27512865					SNP	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37693298	NES09221765	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117011132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	1422 bp proximal
Gm22980	predicted gene, 22980	158 bp downstream
Gm26330	predicted gene, 26330	1251 bp downstream
Rps8	ribosomal protein S8	within coordinates
Rr377051	regulatory region 377051	within coordinates
Rr398411	regulatory region 398411	1984 bp upstream
Rr598068	regulatory region 598068	606 bp distal
Snord38a	small nucleolar RNA, C/D box 38A	581 bp downstream
Snord55	small nucleolar RNA, C/D box 55	1836 bp downstream
Tssr38607	transcription start site region 38607	97 bp downstream
Tssr42956	transcription start site region 42956	1909 bp downstream