rs27512866 SNP Detail

Summary

• ID
  rs27512866
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117011035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTACTGGAC TGGGCCCCTC ACTACAGCTG CACAGTAGAG
  ATGAGTTTGC TCAGAGAGCA GGAAAAAAAC CAGCCTCTCC AAACACCTAG ACAGCATACA
  K
  ATAGAACAGC AGACACCTTT ATTACACTAC ACATGAGGCT CATTTGCCTT TCCGGGCTTT
  GATCTTCCGC AGATAGAACT CCAGCTCCTT GCCTTCGAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37693299	NES09221764	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	G	G			G	G	G	G	G	T
ss45692995	mCV22659082	ABI	CRAMUS_MOUSE	f	SNP	G	T				G	T
ss147285186	ENSMUSSNP6656775	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27512866					SNP	G	T	G	G	G	G	T	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37693299	NES09221764	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117011035 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	1519 bp proximal
Gm22980	predicted gene, 22980	255 bp downstream
Gm26330	predicted gene, 26330	1348 bp downstream
Rps8	ribosomal protein S8	within coordinates
Rr377051	regulatory region 377051	within coordinates
Rr598067	regulatory region 598067	1918 bp distal
Rr598068	regulatory region 598068	509 bp distal
Snord38a	small nucleolar RNA, C/D box 38A	678 bp downstream
Snord55	small nucleolar RNA, C/D box 55	1933 bp downstream
Tssr38607	transcription start site region 38607	within coordinates