rs27513517 SNP Detail

Summary

• ID
  rs27513517
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114829154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTATTTTT ACAGTCTCTT
  AACCAGGTTC ACTTTTCTAC TACATTCTTC ATAAGGATTT TATTGAAGCC ATCCTCTAAC
  AAAATTTCAA CAGCAGCAAA GTAACCCTGA TTTACATATT AGTTACCATG GACCTGGACT
  TTCAAAGCGT TCTGCTGTCA TTAAGTGGTC AGTGATGGCA GATCTGAAGA AAGCGAGCAT
  R
  GTTTATTTCT AGCCTTAGCC ATCTTTTTCT CACATTCTCT GATTTTTTAG CAATTAAAAC
  CTAGTGGTTC TCATATTCAT AAGCACAGCA GCTTATAAAT CCTATAAACT ACAAGGACTG
  CAATTATAAG CTATTATTCA ACTAAGATAG TTTTCTAGTG GCAAATACCC AAACCCAATG
  TCGGGTATCT GTCTAAACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37698041	NES09220546	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27513517					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37698041	NES09220546	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114829154 () rs orientation: forward

Symbol	Name	Function Class
Cmpk1	cytidine/uridine monophosphate kinase 1	Intron
Rr597684	regulatory region 597684	956 bp distal
Tssr42821	transcription start site region 42821	1441 bp upstream