rs27513525 SNP Detail

Summary

• ID
  rs27513525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:114827052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGAAAAT ATCTACCAAA
  AATCTGAGAC TCAAGATAAA AAAGTCAACA TGTCTAAACT GACTGACTAA CATATGTGTG
  TGTGTGTGTG TGTAAAAATT TGGTTTGTAC AAGTATACTC TAATGGTGTT TGAACAAAAC
  TGCCCATTTC CATTGTTAAG TGACACTTGT TATAAGGACA AAGACTGAAC AGAAACATTG
  Y
  TGAGTTAACA CCATAAACAT ATCTATCTAT ACAAACTAAA ATGACTACAA CGTCATTAGG
  TGATATACTC TTCTGAAACT AAGTTGTGCA CATGGCCTTG CACTTAAGTC ACAAAGACAT
  GAAAGTATTG CACTGCTACT GCTTTAGTGC AATAGGAGCC AACAGTCTTA AGGAAAGATC
  CTGAAAAATG AAAAGCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37698049	NES09220621	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27513525					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37698049	NES09220621	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114827052 () rs orientation: forward

Symbol	Name	Function Class
Cmpk1	cytidine/uridine monophosphate kinase 1	within coordinates
Rr597684	regulatory region 597684	970 bp proximal
Tssr42821	transcription start site region 42821	657 bp downstream