rs27513779 SNP Detail

Summary

• ID
  rs27513779
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116678073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCA GCACGCTGCA GCAACGTAAG
  R
  CTTAGATTAC CAGCCGGAGA GCTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37694003	NES09214573	PERLEGEN	MM_PANEL2	f	SNP	G			G	A	A	A		A	A	G		G	A	G	G		A
ss45727451	mCV22661481	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					G	A
ss321278286	CHEV_4_116493481	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27513779					SNP	G	G	A	G	A	A	A	G	A	A	G	A	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694003	NES09214573	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116678073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14642	CpG island 14642	within coordinates
Hpdl	4-hydroxyphenylpyruvate dioxygenase-like	within coordinates
Mutyh	mutY DNA glycosylase	1436 bp downstream
Rr597993	regulatory region 597993	821 bp proximal
Tssr42929	transcription start site region 42929	4 bp downstream
Tssr42930	transcription start site region 42930	29 bp downstream
Tssr42931	transcription start site region 42931	596 bp downstream
Tssr42932	transcription start site region 42932	612 bp downstream
Tssr42933	transcription start site region 42933	625 bp downstream