rs27513780 SNP Detail

Summary

• ID
  rs27513780
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116677899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGGAGTCTG CAAGGCAGTA AGCCGTAGTC CCCCTCGCCC
  AGACCCTGCA GCCACCTTGA GGCCCATCTC CGGATCCTCA CCTGGGCTCA GCGGCAAGTG
  R
  TGAAAGCCTA GGCAGTCGTG GAACCAGCGC ATAAGCATAG GGGAGCTGCC GGAGGTGCAG
  GCCAAGGTCA AGTGGTCCAC GTGGCTGACC CAACCTGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37694004	NES09214572	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	A		A	G	A	A	A	A	A	A	G
ss45701448	mCV22661482	ABI	CRAMUS_MOUSE	f	SNP	A	A	G					A		G
ss147281494	ENSMUSSNP621845	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27513780					SNP	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694004	NES09214572	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116677899 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14642	CpG island 14642	within coordinates
Hpdl	4-hydroxyphenylpyruvate dioxygenase-like	within coordinates
Mutyh	mutY DNA glycosylase	1262 bp downstream
Rr597993	regulatory region 597993	995 bp proximal
Tssr42929	transcription start site region 42929	178 bp downstream
Tssr42930	transcription start site region 42930	203 bp downstream
Tssr42931	transcription start site region 42931	770 bp downstream
Tssr42932	transcription start site region 42932	786 bp downstream
Tssr42933	transcription start site region 42933	799 bp downstream