rs27513781 SNP Detail

Summary

• ID
  rs27513781
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116677500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAGCACC AAGGACAAGT
  GGCAACTCCC AGGCCTAGCC TGGGTTAGGC TCCCTGGGCC CTGGCTGCTT CCTCTTGCAC
  CGACTGCCAT AGTGCCCTGA TGTTGTTCTG GCCAAAGCCT GTGGCCCCCT GTCTCTGAAT
  CAGCTCCAGG AAGAAAGTGT CTTCGGCGAA GAGGGACTTG GTGAAGACCT GAAGCAAAAA
  Y
  TCGTCTTTAT CACCATCCAG CAGGATTCCC TGCCGTTCTA GAAGGCCAGG CTTGTGCCCT
  GCGGCTAGAA TTTGTTCTTC TTTGCCGGGC TGCTGGTAAT AAGCTTCAGG AGGAGTCAGA
  AGCCGGCATC CCGCCTTCGC CATTCCCTCA GAAGCATCTA TGATGTTAGG AGTGTACAGT
  CCTACGTGCT GCAGGCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37694005	NES09214571	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27513781					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694005	NES09214571	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116677500 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14642	CpG island 14642	249 bp proximal
Hpdl	4-hydroxyphenylpyruvate dioxygenase-like	within coordinates
Mutyh	mutY DNA glycosylase	863 bp downstream
Rr597993	regulatory region 597993	1394 bp proximal
Tssr42929	transcription start site region 42929	577 bp downstream
Tssr42930	transcription start site region 42930	602 bp downstream
Tssr42931	transcription start site region 42931	1169 bp downstream
Tssr42932	transcription start site region 42932	1185 bp downstream
Tssr42933	transcription start site region 42933	1198 bp downstream