rs27513785 SNP Detail

Summary

• ID
  rs27513785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116676887 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGAGGGAGC AGCTGTCAAG TGCCTGACAT CCATCACTCC
  CATCTGGGTC TCAGGTCAGC TCTGATTGGA ACTAGACATC ACCTTACCCA GGCGGCTGAG
  Y
  TATGCTGGCC TCTTAGTCTG CACCTGCAAC AGGTGCTCCC TAGAGAGGTC AGCACAAAGG
  AAGATTTGTA TCAAATTCCT TCCTCAACAA CAGAATCATT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37694009	NES09214567	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27513785					SNP	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694009	NES09214567	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116676887 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14642	CpG island 14642	862 bp proximal
Hpdl	4-hydroxyphenylpyruvate dioxygenase-like	217 bp downstream
Mutyh	mutY DNA glycosylase	250 bp downstream
Tssr42929	transcription start site region 42929	1190 bp downstream
Tssr42930	transcription start site region 42930	1215 bp downstream
Tssr42931	transcription start site region 42931	1782 bp downstream
Tssr42932	transcription start site region 42932	1798 bp downstream
Tssr42933	transcription start site region 42933	1811 bp downstream