rs27514061 SNP Detail

Summary

• ID
  rs27514061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116552501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTGGATCT CTGAGGTTAA TTTTACTTAT TTTTTTGGTT
  CTTTGAAGAT AGGGTCTCTC TAGGTAGGTA GCAGTTGTCA TGCAGAAAAT ACAGCCAATC
  Y
  TAGACTTTTT CCTAAGTGTG TAAAAGATTG AGAAACTCTG CTCTTTACTT ATCAAAGGAG
  TTGAAGACAA TTAAAATGGA ACAGCATTTG TAAACTGCTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37694294	NES09219596	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27514061					SNP	T	T	T	T	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694294	NES09219596	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116552501 () rs orientation: forward

Symbol	Name	Function Class
9530001N24Rik	RIKEN cDNA 9530001N24 gene	1773 bp upstream
Prdx1	peroxiredoxin 1	within coordinates
Tssr38561	transcription start site region 38561	1559 bp downstream
Tssr38562	transcription start site region 38562	1449 bp downstream
Tssr38563	transcription start site region 38563	1344 bp downstream
Tssr38564	transcription start site region 38564	1209 bp downstream
Tssr38565	transcription start site region 38565	1176 bp downstream
Tssr38566	transcription start site region 38566	715 bp upstream