rs27514062 SNP Detail

Summary

• ID
  rs27514062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116552444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAGGCAG GAGTAGTGCA
  CATTCAAGGC CAACCTGGAC TAAAGAGTTA ATTAAGTCTG TGTCCTTTTT ATTAAGGGGT
  TATGGGAACC TTGCCAGCAA GCTGGCATCA TGTCACACCT TTTATACTCT TATTTTCTTC
  CTTTTGGAGG CAGAGGCAGG TGGATCTCTG AGGTTAATTT TACTTATTTT TTTGGTTCTT
  Y
  GAAGATAGGG TCTCTCTAGG TAGGTAGCAG TTGTCATGCA GAAAATACAG CCAATCTTAG
  ACTTTTTCCT AAGTGTGTAA AAGATTGAGA AACTCTGCTC TTTACTTATC AAAGGAGTTG
  AAGACAATTA AAATGGAACA GCATTTGTAA ACTGCTGGCT TTGGTTTCTT TTTGGTTTTG
  GTTTTTGTAG TTAGTTAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37694295	NES09219595	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T	T		T	T	C	C		T
ss321277810	CHEV_4_116367852	CHEVERUD	SCREENING_POP	f	SNP								T					C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27514062					SNP	T	C	T	T	T	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694295	NES09219595	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116552444 () rs orientation: forward

Symbol	Name	Function Class
9530001N24Rik	RIKEN cDNA 9530001N24 gene	1830 bp upstream
Prdx1	peroxiredoxin 1	within coordinates
Tssr38561	transcription start site region 38561	1502 bp downstream
Tssr38562	transcription start site region 38562	1392 bp downstream
Tssr38563	transcription start site region 38563	1287 bp downstream
Tssr38564	transcription start site region 38564	1152 bp downstream
Tssr38565	transcription start site region 38565	1119 bp downstream
Tssr38566	transcription start site region 38566	772 bp upstream