rs27514065 SNP Detail

Summary

• ID
  rs27514065
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116552003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTTAGAT TTGATCCTTA
  GCACATACAT GGTGGATCAA AACAGTCAAC TCCATTTCTA GGGGTCCAGT GCCCTTCTGA
  CCTCCTGTGG CACAGGGTTT ACACGTGGTA CATATGCATA CCTGAAGGCA AAAAAACTCT
  TTAAAAATGT ATGGTTACTA GAGATGTAGC TCCTTGGTAG CTTCTCTAAC CTGTGAGTCC
  Y
  TGAGGTTCAT GTCTAGCATT CATGCTACCA AGAATTGGTA TTTTGGTGCT GGGGATGTAG
  CTTAGTATAA TCCTAGCACT TTTGGGAAGA GGTTTAAGGT CAGGCTCATT CTGGGCTACT
  TAGTTATAGG ACTACATGCT CAAAAACAAA AGGTGTTGGA GAACTCATTA TAGGATCAAG
  GTAATATTTT GCTGTGTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37694298	NES09219632	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27514065					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37694298	NES09219632	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116552003 () rs orientation: forward

Symbol	Name	Function Class
Prdx1	peroxiredoxin 1	within coordinates
Tssr38561	transcription start site region 38561	1061 bp downstream
Tssr38562	transcription start site region 38562	951 bp downstream
Tssr38563	transcription start site region 38563	846 bp downstream
Tssr38564	transcription start site region 38564	711 bp downstream
Tssr38565	transcription start site region 38565	678 bp downstream
Tssr38566	transcription start site region 38566	1213 bp upstream