rs27516836 SNP Detail

Summary

• ID
  rs27516836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129205523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACAAGAG ATTTTGACAT
  TTATGTATTG TGCGCGTACA AATCCCTCTT GGTTCAGTTT CTCCAAGAAC TAGGAATACA
  GGGCTACCAT ACATACACCT TGTTTATTAT ATTGGGATAT AACTGAGAGA CCAAATGAAA
  GAGATAAATA CAATAGGGAG CAGACAGGGT TGCTTCTCAC GCTGCTTTCC AAGCAAATCA
  R
  TGTGAACACA GAACTCTAGA AGCTCAAACT TCTCCCATCC CCACAGGGGA GGCTGAGAGT
  TCCAAATGTT TGTCAGCAAT TTTGCTGACT AGCCCAACTG CAAGGCTACC TAGAGTTCCA
  CCAAAATTGC CTTACTAACG GGTCTCGGCA CGACCACAAG GGAGCATCAT CACCAACAGG
  ACACACTGAG CTGGAAATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
ss37720064	NES09229823	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	WSB/EiJ
rs27516836					SNP	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37720064	NES09229823	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129205523 () rs orientation: forward

Symbol	Name	Function Class
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	within coordinates
Tssr39139	transcription start site region 39139	844 bp upstream
Tssr43491	transcription start site region 43491	1844 bp upstream