rs27516839 SNP Detail

Summary

• ID
  rs27516839
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129205333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACCCCAT AACTAAATAG
  AGGGAGGGGA TAGTATTTCA TGTTATACTC ATCAATAGAC TTAACAGATA CCATCTCAGA
  GGGTCACTGC AAGCTCCAAT TTATAGAATT CTTTCTATTC ATCATTGCTA TAAAATTTGG
  AGGTCTTGCA AGAAACTTCT TCACTTGGTT TGAAAATGTT CTGATTCCAC AGAACAAGAG
  M
  TTTTGACATT TATGTATTGT GCGCGTACAA ATCCCTCTTG GTTCAGTTTC TCCAAGAACT
  AGGAATACAG GGCTACCATA CATACACCTT GTTTATTATA TTGGGATATA ACTGAGAGAC
  CAAATGAAAG AGATAAATAC AATAGGGAGC AGACAGGGTT GCTTCTCACG CTGCTTTCCA
  AGCAAATCAG TGTGAACACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37720067	NES09229817	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	C		C	A	C		A
ss321311863	CHEV_4_128988784	CHEVERUD	SCREENING_POP	f	SNP											A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27516839					SNP	A	A	A	A	A	A	C	A	A	C	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37720067	NES09229817	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129205333 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor			Intron
				Noncoding-Transcript-Variant
Tssr39139	transcription start site region 39139			1034 bp upstream
Tssr43491	transcription start site region 43491			1654 bp upstream