rs27516841 SNP Detail

Summary

• ID
  rs27516841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129204323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAAATTG GTACGGTCAA
  TTGGTGTGTC AATAAAAACA GGAGAGGCCA CAGCCTCCTG TACCGGGCAC TTTTACATGA
  ATATGGATGA TCATCATTCC CAAGCCCTTT AACCAGATGG ATTATTGCTA ATTGCTAAAA
  TAAAAACCAT AAATGTCTCT ATGAAATACA CAGAAAGTAA TGTTTATGAG TAAAGAATTT
  Y
  TTTTTGGAAA GATAGAAGTG TTTTTGTTTT TTTTTTTAAT TTTTGTGATG TGCAATTCTG
  GTGCATGATA AAACTCACTG AATGGTAAAG CTTTCTATCC AAACCTCAAT TTTTCGTTTT
  CTGGGAGGGG TTTTTGAGAC AGGGTTCCTC TGTGTAGCCC TGGCTGTTCT GGAACTCACT
  CTGTAGACCA GGCTAGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37720069	NES09229917	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T		T	C	T		C
ss321311853	CHEV_4_128987774	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27516841					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37720069	NES09229917	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129204323 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor			Intron
				Noncoding-Transcript-Variant
Sync	syncoilin			1971 bp downstream
Tssr43491	transcription start site region 43491			644 bp upstream