rs27516844 SNP Detail

Summary

• ID
  rs27516844
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129204053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGAGTCT AGGATCACAG
  GTGCAGACAC GTCTAGGACC CTTGTCCCTC TGGATCCACA CTTCCTTCAG GATCTTCATC
  ATTGTAAATG TTCTCCGCCT GCCATAAAGA AATAAGAAAG AAAGAAAGAA GAAGGTATTT
  AGCATGAAGA CAAGTTTTTA TAAAATATTA TGCCAAGGCG CCTGATAACA TTTCAAGGAC
  R
  GCCATACATT TCTAACTACT TAATAACTAC TGTTGAATAA AAACAGCAAC AACATGCAAA
  TAGTATCAAT CACAAATTGG TACGGTCAAT TGGTGTGTCA ATAAAAACAG GAGAGGCCAC
  AGCCTCCTGT ACCGGGCACT TTTACATGAA TATGGATGAT CATCATTCCC AAGCCCTTTA
  ACCAGATGGA TTATTGCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37720072	NES09229914	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27516844					SNP	A	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37720072	NES09229914	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129204053 () rs orientation: forward

Symbol	Name	Function Class
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	within coordinates
Sync	syncoilin	1701 bp downstream
Tssr39138	transcription start site region 39138	1842 bp downstream
Tssr43491	transcription start site region 43491	374 bp upstream