rs27516850 SNP Detail

Summary

• ID
  rs27516850
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129202822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCACCCC TCCTGTCCTG
  GACCTAACTC ACGGAAACCT ACAAGCTCTA GGATTAAAAG TGCACATCCC ATATCCAGCT
  TGATAATTTG TACTACATGC CAGCGTAATC ACAAGTTCTA GGCATCACTT CAGATCTGGA
  CCAGACACTT CATTACCCAA ACTTTCCCAA AGCCATAAAT GGTTCTGAGG TGAGAGTCAT
  S
  TAGTCAGTCC AAGCAAAAGC AGGTTTGCTT GTTTTTTTTT TTTTTTTTTC CCCTTTCGCC
  AGTTATCACC AAGTGGTAAT AAAGGCACTG ACTCTTAAGT CTATACTTTA AAAGTAGGGG
  TTCCAATGAA AAACACTCAT CAGATACAAG CTCTCTGTAA ACAGTTCAAG TGTGTTTTAA
  ATTTAAACTC TGCCTTAAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37720078	NES09229908	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	G	C		C	C	C	C	C	C	C	C	C
ss45647071	mCV22716380	ABI	CRAMUS_MOUSE	f	SNP		G	C					C		C
ss147438167	ENSMUSSNP4449417	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27516850					SNP	G	G	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37720078	NES09229908	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129202822 () rs orientation: forward

Symbol	Name	Function Class
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	mRNA-UTR
Sync	syncoilin	mRNA-UTR
Tssr39138	transcription start site region 39138	611 bp downstream
Tssr43491	transcription start site region 43491	843 bp downstream