rs27516855 SNP Detail

Summary

• ID
  rs27516855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129202292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCAGCAG AACCCTGAGT
  GATGGATGCA TCACCATACC CTGAACTATC GTGAAGAATG TTATGGAGTG CTTTGTGCTG
  ACCCAAACCA AGAACGTCTG AGGGAAAATG TTGGGGTCAA AGGGCAGCCA ATTTCTGCTA
  TATGGATCCA CAACTTTGTG CTACAGGTAT TAGATTTTAA GACTCTGCTC ACAAAGCCAT
  Y
  TTCCCCTTCA AGTCTACACT CGTATTTTAC TCTTAAAATA GTGTCAAATT AAAAAACACC
  AAAAAAACAA ACCACTACCA CCACCACCAC CAGACCCCAC TTATATATAG CCCCAAGTGG
  CCTAGAACTC ACTCTTTAGA CAACGTTGGC CCTGAACTCT GCTGGGATTA AAGGAATGGC
  ATGCTTTTTT TTGAGACCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37720083	NES09229953	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T		T	C	C	T		C
ss321311839	CHEV_4_128985743	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27516855					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37720083	NES09229953	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129202292 () rs orientation: forward

Symbol	Name	Function Class
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	within coordinates
Sync	syncoilin	within coordinates
Tssr39138	transcription start site region 39138	81 bp downstream
Tssr43491	transcription start site region 43491	1373 bp downstream