rs27516857 SNP Detail

Summary

• ID
  rs27516857
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129202030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGGGACT GTTTAGAAAT
  ATATGGTCGG ACCTGTAGCC CAGAAACAAG AAAACATTTA TTAAAGGATC ACTAGGATGG
  ACTTTCCCCC AACAGATAAG AGTACCAGCA CTGGCAAGCA ATTCACCCTG TAAAAGTACA
  AACACTGGCT GTTTTGCCTA AAAATATTTT AGGTTGGCTG GAAGCAGAAT CCCAGTCAAC
  W
  TTTTTTGTAG GCTGCTGGTA CTGATTTCAG TGTACTATGG AAGGGAAAAA GAGCCTTTTA
  TCTTCCAGCA GAACCCTGAG TGATGGATGC ATCACCATAC CCTGAACTAT CGTGAAGAAT
  GTTATGGAGT GCTTTGTGCT GACCCAAACC AAGAACGTCT GAGGGAAAAT GTTGGGGTCA
  AAGGGCAGCC AATTTCTGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37720085	NES09229951	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27516857					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37720085	NES09229951	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129202030 () rs orientation: forward

Symbol	Name	Function Class
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	within coordinates
Sync	syncoilin	within coordinates
Tssr39138	transcription start site region 39138	176 bp upstream
Tssr43491	transcription start site region 43491	1635 bp downstream