rs27517174 SNP Detail

Summary

• ID
  rs27517174
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119953889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTAGGT GCTCATGAAG
  TGGAAAAGAC TCAGGCTGAG CCTGAGCCTT GGTCCCAGAT GATGCATTAT AAACTGGGGG
  CCACCTTGGA ACTCACTCCG CTGAGAAAAA GACGGAAAGA AAAGAGCCTT GGAGATGAGG
  AAGAGCCACC TGCCTTTGGC AGCCCAGGCC CTTCAGAAAC AGCTCATAAC CGTCCCCTGG
  R
  GTCCACCAAG TCACCAGCAG AAGCAAGCAA ATCAGCGCCC TCTCTAGAGG GACCCACGAG
  CTTCCAGCCC AGGACTCCCA AGCCAGGAGC TGGGTCAGAA CCAGGGAAGG AGAGGAGAAC
  AATGTCCAAA GAAATTTCCG TCATCCAGCA CACCAGCTCC TTTGAGAAGT CTGACCCACC
  GGAGCAGCCC AGTGGCCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37714104	NES09200020	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27517174					SNP	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714104	NES09200020	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119953889 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Tssr38766	transcription start site region 38766			1538 bp downstream
Tssr38767	transcription start site region 38767			119 bp downstream
Tssr38768	transcription start site region 38768			493 bp upstream
Tssr38769	transcription start site region 38769			1031 bp upstream
Tssr38770	transcription start site region 38770			1208 bp upstream