rs27517176 SNP Detail

Summary

• ID
  rs27517176
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119953003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACGCAGAG ATCATCTTCG GCAAGTGTGG ACGGATTGGG
  CAGCGGACCT CCATGCTGGC ATCCACCTCT ACCCAGCCCC TACTGCCTCT ATCCTCGGAA
  K
  ACAAGCCCAG CTTGGTACCT TTGTCTGTGC CCAGGACACA AGTGATCGAA CATATCACCA
  AGCTCATCAC CATCAATGAA GCCGTGGTGG ACACCAGTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37714106	NES09200018	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	T	G	G	G	G	G	G	G
ss45656259	mCV24857750	ABI	CRAMUS_MOUSE	f	SNP	G	G					G		T
ss147340959	ENSMUSSNP3713314	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27517176					SNP	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714106	NES09200018	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119953003 () rs orientation: forward

Symbol	Name	Function Class
Gm55960	predicted gene, 55960	1833 bp downstream
Hivep3	human immunodeficiency virus type I enhancer binding protein 3	within coordinates
Tssr38766	transcription start site region 38766	652 bp downstream
Tssr38767	transcription start site region 38767	759 bp upstream
Tssr38768	transcription start site region 38768	1379 bp upstream
Tssr38769	transcription start site region 38769	1917 bp upstream