rs27517177 SNP Detail

Summary

• ID
  rs27517177
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119952489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACACATTC GCTCACACAC
  AGGTGAGAGG CCCTACCCCT GCGGCCCCTG CGGCTTCTCC TTCAAGACCA AGAGTAACCT
  CTACAAGCAC AGGAAGTCCC ATGCCCACCG TATCAAAGCT GGCCTGGCCT CGGGCTCCAG
  CAGTGAGATG TACCCCCCTG GGCTGGAGAT GGAGAGGATC CCCGGGGAAG AGTTTGAGGA
  R
  CCCACCGAGG GAGAAAGCAC AGACTCTGAG GAGGAAACGG GTGCCGCATC AGGTCCCTCC
  ACAGATGTTC TCCCCAAACC CAAGCACCCC CTGCTCTCAA GTAGTTTGTA CAGCTCCGGG
  AGCCACGGTT CCAGCCAGGA ACGCTGCTCC CTCTCCCAGT CAAGCACTGG CCCATCACTA
  GAGGACCCCG CCCCATTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37714107	NES09200017	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27517177					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714107	NES09200017	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119952489 () rs orientation: forward

Symbol	Name	Function Class
Gm55960	predicted gene, 55960	1319 bp downstream
Hivep3	human immunodeficiency virus type I enhancer binding protein 3	within coordinates
Tssr38766	transcription start site region 38766	138 bp downstream
Tssr38767	transcription start site region 38767	1273 bp upstream
Tssr38768	transcription start site region 38768	1893 bp upstream