rs27517178 SNP Detail

Summary

• ID
  rs27517178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:119951805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAAGGGCAC CAAGAAGGCT GATGGAAGTC CCCGGAAGCG
  GCTGACCAAA GGAGAGGCCA TTCAGACGAG TGTTTCTTCC AGTGCTCCAT ACCCAGGCAG
  Y
  GGCACTACTG CTCCCTCAGA GAGTGCCACC CAGGAGCTCC TAGCCACGCA GCCTTTCTCA
  GGCCCCTCTC AGGAGAAAAC GGGCCAGCAG CAGAAGCCTG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37714108	NES09200016	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27517178					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714108	NES09200016	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119951805 () rs orientation: forward

Symbol	Name	Function Class
Gm55960	predicted gene, 55960	635 bp downstream
Hivep3	human immunodeficiency virus type I enhancer binding protein 3	within coordinates
Rr91847	regulatory region 91847	1605 bp distal
Tssr38766	transcription start site region 38766	505 bp upstream
Tssr38767	transcription start site region 38767	1957 bp upstream