rs27518885 SNP Detail

Summary

• ID
  rs27518885
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129473967 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA CTAAGGTCAA ATAGTGCTTC
  K
  CCATAAGGGG GTGCGGCCTG GATTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37719038	NES09233093	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T		G	T		T	G	G	T		G
ss147443040	ENSMUSSNP1254252	ENSEMBL	ENSEMBL_Sanger	f	SNP						G
ss321314017	CHEV_4_129257418	CHEVERUD	SCREENING_POP	f	SNP									G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27518885					SNP	G	G	G	G	T	G	G	T	G	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719038	NES09233093	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129473967 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	1625 bp upstream
Rr600283	regulatory region 600283	1320 bp distal
Rr600284	regulatory region 600284	within coordinates
Rr600285	regulatory region 600285	654 bp proximal
Tssr43532	transcription start site region 43532	1657 bp upstream
Tssr43533	transcription start site region 43533	1642 bp upstream
Tssr43534	transcription start site region 43534	1614 bp upstream