rs27518887 SNP Detail

Summary

• ID
  rs27518887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129473768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTC CAGGCAAACT TAAAGTCAGC
  Y
  TGGAATACAG GAGACCATGA CTCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37719040	NES09233096	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C		C	T	C		T
ss321314012	CHEV_4_129257219	CHEVERUD	SCREENING_POP	f	SNP						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27518887					SNP	T	T	T	T	C	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719040	NES09233096	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129473768 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	1426 bp upstream
Rr600283	regulatory region 600283	1121 bp distal
Rr600284	regulatory region 600284	within coordinates
Rr600285	regulatory region 600285	853 bp proximal
Tssr43532	transcription start site region 43532	1458 bp upstream
Tssr43533	transcription start site region 43533	1443 bp upstream
Tssr43534	transcription start site region 43534	1415 bp upstream