rs27518889 SNP Detail

Summary

• ID
  rs27518889
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129472878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAG ACCTATGTAG ACCAGGATAA
  S
  CTTCAACAGA AATTTGCCTC TGCCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37719042	NES09233100	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G		G	C	C	G		C
ss147442978	ENSMUSSNP5993476	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss321314008	CHEV_4_129256329	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27518889					SNP	C	C	C	C	C	C	C	C	C	G	C	G	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719042	NES09233100	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129472878 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	536 bp upstream
Rr600282	regulatory region 600282	1766 bp distal
Rr600283	regulatory region 600283	231 bp distal
Rr600284	regulatory region 600284	759 bp proximal
Rr600285	regulatory region 600285	1743 bp proximal
Tssr43532	transcription start site region 43532	568 bp upstream
Tssr43533	transcription start site region 43533	553 bp upstream
Tssr43534	transcription start site region 43534	525 bp upstream