rs27518890 SNP Detail

Summary

• ID
  rs27518890
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129472838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTGGGAG TCAGGAGCCC
  TGGGCCCTGG TGCTACTTTG AGGGGACTTT AGGTAGCTCA GTCACTTCTT GAGCCTCTGT
  TGTGACAGGT CGGTGACACC AAGTCTTACT CCAACGGCCC TTAGGTTCTG TTGGCAATCA
  CTGAAAAAGC TCTGACTGAA GGAGTTCATC TCATCTCTAA TGATGGCCGG CCTAGAACAA
  Y
  GTGCAGGCTT ACTATGTAGA CCTATGTAGA CCAGGATAAG CTTCAACAGA AATTTGCCTC
  TGCCTCTTTC TCTTCCTCTC TCCTCTTTTC TTTTCTGTTT TCTTTTTTTG AGAGAAGGTT
  TCTCTTTGTA GCTTTGGCTG GCTTGGAACT TGCTCTGTGG GCCAAGCTGG CTTCAAACTC
  ACAGAGATCC GCCTGCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37719043	NES09233099	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27518890					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719043	NES09233099	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129472838 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	496 bp upstream
Rr600281	regulatory region 600281	1963 bp distal
Rr600282	regulatory region 600282	1726 bp distal
Rr600283	regulatory region 600283	191 bp distal
Rr600284	regulatory region 600284	799 bp proximal
Rr600285	regulatory region 600285	1783 bp proximal
Tssr43532	transcription start site region 43532	528 bp upstream
Tssr43533	transcription start site region 43533	513 bp upstream
Tssr43534	transcription start site region 43534	485 bp upstream