rs27518891 SNP Detail

Summary

• ID
  rs27518891
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129472770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTGGCTG GTGCTCTTTC
  CTCTTTACAG AGCTAGCCCT TCTGCAAGGC AATAGGGTCC AGCTGCCTAG CCTGGGAGTC
  AGGAGCCCTG GGCCCTGGTG CTACTTTGAG GGGACTTTAG GTAGCTCAGT CACTTCTTGA
  GCCTCTGTTG TGACAGGTCG GTGACACCAA GTCTTACTCC AACGGCCCTT AGGTTCTGTT
  R
  GCAATCACTG AAAAAGCTCT GACTGAAGGA GTTCATCTCA TCTCTAATGA TGGCCGGCCT
  AGAACAATGT GCAGGCTTAC TATGTAGACC TATGTAGACC AGGATAAGCT TCAACAGAAA
  TTTGCCTCTG CCTCTTTCTC TTCCTCTCTC CTCTTTTCTT TTCTGTTTTC TTTTTTTGAG
  AGAAGGTTTC TCTTTGTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37719044	NES09233098	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27518891					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719044	NES09233098	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129472770 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	428 bp upstream
Rr600281	regulatory region 600281	1895 bp distal
Rr600282	regulatory region 600282	1658 bp distal
Rr600283	regulatory region 600283	123 bp distal
Rr600284	regulatory region 600284	867 bp proximal
Rr600285	regulatory region 600285	1851 bp proximal
Tssr43532	transcription start site region 43532	460 bp upstream
Tssr43533	transcription start site region 43533	445 bp upstream
Tssr43534	transcription start site region 43534	417 bp upstream