rs27518893 SNP Detail

Summary

• ID
  rs27518893
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129472371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGC AAGAGATGGA ATTTTCCTGG
  Y
  TTGCTAACTA GGGGCCACGT GATGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37719046	NES09233107	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		T	C	C	T		T	C	C	T		T
ss45586912	mCV24828923	ABI	CRAMUS_MOUSE	f	SNP	T	T						T		C
ss147442967	ENSMUSSNP4307445	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								C
ss321314006	CHEV_4_129255822	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27518893					SNP	T	T	C	C	C	T	C	T	T	C	C	T	C	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719046	NES09233107	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129472371 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	29 bp upstream
Rr600281	regulatory region 600281	1496 bp distal
Rr600282	regulatory region 600282	1259 bp distal
Rr600283	regulatory region 600283	within coordinates
Rr600284	regulatory region 600284	1266 bp proximal
Tssr43532	transcription start site region 43532	61 bp upstream
Tssr43533	transcription start site region 43533	46 bp upstream
Tssr43534	transcription start site region 43534	18 bp upstream