rs27518894 SNP Detail

Summary

• ID
  rs27518894
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129472154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCACAGA TGGCCCCGGG
  TCCGACTGGC TCAGGTCTAG CTTGGGCTCT GTACCAAGCC CGGCTCTGGA CTCTGGCAGT
  CCACTCGAGG TATGAGGGCC GTCGGGTCTG CAGTTGAAGC TTGGCAGTCA GGGCCTTCAG
  AGAATCTAAG CTCTCTTCCT CATCCTCCTC ACCCTTCTCT CCCACTGCCT GGAATTTCAG
  Y
  GGCCCTAGGG ACATGGTAGG TCTGTGGTGA CCAACGGGAC AGTAAGGGAA AGGCTGGCTA
  TTTGGCCGTG TGAGAAGTGA AAGAAGATGA GGTTGAAAAG AATGTGCCAA GAGTGTGTGC
  TGAATTGAGA AGGTGGGTGA GGGACGCTAA GTGTGCCAGG CTGAGTGAGC AGATGGGTAT
  GTGAGGCTAA GTGTGCAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37719047	NES09233106	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27518894					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719047	NES09233106	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129472154 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	within coordinates
Rr600281	regulatory region 600281	1279 bp distal
Rr600282	regulatory region 600282	1042 bp distal
Rr600283	regulatory region 600283	178 bp proximal
Rr600284	regulatory region 600284	1483 bp proximal
Tssr43532	transcription start site region 43532	151 bp downstream
Tssr43533	transcription start site region 43533	160 bp downstream
Tssr43534	transcription start site region 43534	174 bp downstream