rs27518899 SNP Detail

Summary

• ID
  rs27518899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129471713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTCATGC TGTGATGACT
  CCCAAGCATA AAATTATTTT CATTGCTACT TTGTAACCGT AATCTTGCCA CTGCTACGAC
  TTTTAAATAA TTTTAAATAT AAATATCTGA TATACTGGAT ATCTGATATG CAACCTGTCT
  AAAAGTGCTT TTGGATGCCC AAAGGGGTCG AGACCCACAG ATTGAGAACC TGTGCTCTAC
  R
  GTCTACTTCT CCAGATTTGG CTCTGCAAAT AAGATAGCGA GCAACTGAAT TCCTGGTTCC
  GTTGTCCTAG GGCACAGCAC TGAGGAACTA CTGTGGACAT TGGTTTGTTC TCATCTCCTT
  CCAACCTCAC AGATTTGGGC CTTTAGAGGG ACTGGCTCAA AGACCCCATG CAAGTCCATC
  TAACCCACCA GACTCACCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37719052	NES09233101	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	G	G	G	G	G	G	G	G	A
ss147442941	ENSMUSSNP391159	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27518899					SNP	A	A	G	G	G	A	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719052	NES09233101	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129471713 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	within coordinates
Rr600280	regulatory region 600280	1961 bp distal
Rr600281	regulatory region 600281	838 bp distal
Rr600282	regulatory region 600282	601 bp distal
Rr600283	regulatory region 600283	619 bp proximal
Rr600284	regulatory region 600284	1924 bp proximal
Tssr43532	transcription start site region 43532	592 bp downstream
Tssr43533	transcription start site region 43533	601 bp downstream
Tssr43534	transcription start site region 43534	615 bp downstream