rs27518900 SNP Detail

Summary

• ID
  rs27518900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129471439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAG CAGGGTCGGT TTCTGCTTTT
  Y
  ACTTGACTGT CTCTTCTCTT TAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37719053	NES09233116	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	T	C	T		T	C	T		C
ss147442907	ENSMUSSNP3755746	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C						C
ss321313998	CHEV_4_129254890	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27518900					SNP	C	C	C	C	C	C	T	C	T	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719053	NES09233116	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129471439 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	within coordinates
Rr600279	regulatory region 600279	1800 bp distal
Rr600280	regulatory region 600280	1687 bp distal
Rr600281	regulatory region 600281	564 bp distal
Rr600282	regulatory region 600282	327 bp distal
Rr600283	regulatory region 600283	893 bp proximal
Tssr39178	transcription start site region 39178	1995 bp downstream
Tssr43532	transcription start site region 43532	866 bp downstream
Tssr43533	transcription start site region 43533	875 bp downstream
Tssr43534	transcription start site region 43534	889 bp downstream