rs27518903 SNP Detail

Summary

• ID
  rs27518903
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129471292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGA ACCGTTAGTA TGCAAATATA
  K
  ACGTCTGGTA CGCCATCACA AATTA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37719056	NES09233113	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G		G	T	T	G		T
ss147442895	ENSMUSSNP4565929	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss321313995	CHEV_4_129254743	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27518903					SNP	T	T	T	T	T	T	T	T	T	G	T	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719056	NES09233113	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129471292 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	within coordinates
Rr600279	regulatory region 600279	1653 bp distal
Rr600280	regulatory region 600280	1540 bp distal
Rr600281	regulatory region 600281	417 bp distal
Rr600282	regulatory region 600282	180 bp distal
Rr600283	regulatory region 600283	1040 bp proximal
Tssr39178	transcription start site region 39178	1848 bp downstream
Tssr43532	transcription start site region 43532	1013 bp downstream
Tssr43533	transcription start site region 43533	1022 bp downstream
Tssr43534	transcription start site region 43534	1036 bp downstream