rs27518904 SNP Detail

Summary

• ID
  rs27518904
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129471234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGCAGCCT GAGCAGCTGC
  CCTGCCAGCT GCCGGTCCTG AGCCCGCATC TCCTGCTGTG ACCAAAAGGG GGCGTAAATT
  TGCTAGATTA GCCTCCGGGC TCACCAGCCC AGCCGCCGGT CCATTTCTGG GAATACTCTT
  TGCATAGTCC AGCTCGCAAT CCCCTTCTCA CCTAACTTCA TCCGCCTCGG TCTCGCAGAT
  Y
  TTTTTCCGGA TGGGTGATTC TCAAGCCAAG CCAAGGAACC GTTAGTATGC AAATATAGAC
  GTCTGGTACG CCATCACAAA TTAACTGTGA TGACCCGTTG AGCTGAACTG GACATCCTTA
  TGTTTGCACA TGGTGGGCTG ACAGCTAATA TTCAACTCTG CCCTCCTCAG ATTATAACTG
  ACAGCAGGGT CGGTTTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37719057	NES09233112	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	C	C	C	C	C	T
ss147442890	ENSMUSSNP1880354	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27518904					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719057	NES09233112	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129471234 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	within coordinates
Rr367705	regulatory region 367705	1956 bp downstream
Rr600279	regulatory region 600279	1595 bp distal
Rr600280	regulatory region 600280	1482 bp distal
Rr600281	regulatory region 600281	359 bp distal
Rr600282	regulatory region 600282	122 bp distal
Rr600283	regulatory region 600283	1098 bp proximal
Tssr39178	transcription start site region 39178	1790 bp downstream
Tssr43532	transcription start site region 43532	1071 bp downstream
Tssr43533	transcription start site region 43533	1080 bp downstream
Tssr43534	transcription start site region 43534	1094 bp downstream