rs27518905 SNP Detail

Summary

• ID
  rs27518905
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129471217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTCTGTGC AGCCGGGCCC
  GCAGCCTGAG CAGCTGCCCT GCCAGCTGCC GGTCCTGAGC CCGCATCTCC TGCTGTGACC
  AAAAGGGGGC GTAAATTTGC TAGATTAGCC TCCGGGCTCA CCAGCCCAGC CGCCGGTCCA
  TTTCTGGGAA TACTCTTTGC ATAGTCCAGC TCGCAATCCC CTTCTCACCT AACTTCATCC
  K
  CCTCGGTCTC GCAGATCTTT TTCCGGATGG GTGATTCTCA AGCCAAGCCA AGGAACCGTT
  AGTATGCAAA TATAGACGTC TGGTACGCCA TCACAAATTA ACTGTGATGA CCCGTTGAGC
  TGAACTGGAC ATCCTTATGT TTGCACATGG TGGGCTGACA GCTAATATTC AACTCTGCCC
  TCCTCAGATT ATAACTGACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37719058	NES09233111	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	T	G	G	G	G	G	G	G	T
ss147442885	ENSMUSSNP2596843	ENSEMBL	ENSEMBL_Sanger	f	SNP		G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27518905					SNP	T	G	G	T	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37719058	NES09233111	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129471217 () rs orientation: forward

Symbol	Name	Function Class
Fam167b	family with sequence similarity 167, member B	within coordinates
Rr367705	regulatory region 367705	1939 bp downstream
Rr600279	regulatory region 600279	1578 bp distal
Rr600280	regulatory region 600280	1465 bp distal
Rr600281	regulatory region 600281	342 bp distal
Rr600282	regulatory region 600282	105 bp distal
Rr600283	regulatory region 600283	1115 bp proximal
Tssr39178	transcription start site region 39178	1773 bp downstream
Tssr43532	transcription start site region 43532	1088 bp downstream
Tssr43533	transcription start site region 43533	1097 bp downstream
Tssr43534	transcription start site region 43534	1111 bp downstream